#DADA2 RARIFY INSTALL#

I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.o hfile_net.cĮcho '#define HTS_VERSION '1.7'' > version.hĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I.

I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I.

I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.o knetfile.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. I/opt/R/arm64/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.cĬlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. c.o'Ĭlang -arch arm64 -falign-functions=64 -Wall -g -O2 -fpic -I. c.o' /Library/Frameworks/R.framework/Resources/etc/Makeconf:168: warning: ignoring old commands for target. Makefile.Rhtslib:128: warning: overriding commands for target. ** using non-staged installation via StagedInstall fieldĬd 'htslib-1.7' & make -f '/Library/Frameworks/R.framework/Resources/etc/Makeconf' -f 'Makefile.Rhtslib' Installing the source packages ‘Rsamtools’, ‘GenomicAlignments’, ‘Rhtslib’, ‘ShortRead’, ‘dada2’ trying URL ' 'Ĭontent type 'application/x-gzip' length 2870315 bytes (2.7 MB)Ĭontent type 'application/x-gzip' length 2301182 bytes (2.2 MB)Ĭontent type 'application/x-gzip' length 1471711 bytes (1.4 MB)Ĭontent type 'application/x-gzip' length 5184732 bytes (4.9 MB)Ĭontent type 'application/x-gzip' length 2871808 bytes (2.7 MB)

#DADA2 RARIFY INSTALL#

Packages which are only available in source form, and may need compilation ofĬ/C++/Fortran: ‘Rsamtools’ ‘GenomicAlignments’ ‘Rhtslib’ ‘ShortRead’ ‘dada2’ĭo you want to attempt to install these from sources? (Yes/no/cancel) yes

_'getOption('repos')' replaces Bioconductor standard repositories, see '?repositories' forīioconductor version 3.13 (BiocManager 1.30.16), R 4.1.1 ()Īlso installing the dependencies ‘Rsamtools’, ‘GenomicAlignments’, ‘Rhtslib’, ‘ShortRead’ Here is the installation output (it looks like it starts to install fine):

Dada2 rarify